PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G15750.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ARF
Protein Properties Length: 898aa    MW: 99736.7 Da    PI: 6.0995
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G15750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.37e-24132233199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  LPERR12G15750.1 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHENEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WN 221
                      99*****************************8544444..48************************************************..77 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  LPERR12G15750.1 222 DNNQLLLGIRRA 233
                      77778***9997 PP

2Auxin_resp114.97.2e-38258341183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++ +sdld+vrWpnS Wrs+k
  LPERR12G15750.1 258 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITCISDLDSVRWPNSYWRSVK 341
                      79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-48117261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-42123247IPR015300DNA-binding pseudobarrel domain
CDDcd100178.31E-22131232No hitNo description
PfamPF023623.8E-22132233IPR003340B3 DNA binding domain
PROSITE profilePS5086312.605132234IPR003340B3 DNA binding domain
SMARTSM010194.0E-25132234IPR003340B3 DNA binding domain
PfamPF065073.9E-33258341IPR010525Auxin response factor
PfamPF023092.1E-7759851IPR033389AUX/IAA domain
SuperFamilySSF542771.7E-6760839No hitNo description
PROSITE profilePS5174522.727765849IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MKLSPSAADA PQALPETDDG EQRCLNSELW HACAGPLVSL PVVRSRVVYF PQGHSEQVAA  60
STNKEVDAQI PNYPNLPPQL ICQLHNVTMH ADAETDEVYA QMTLQPLSPE EQKEPFLPME  120
LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSQQPPAQ ELIARDLHEN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RRANRPQTVM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITCISDLDSV RWPNSYWRSV KVGWDESTTG DKQPRVSLWE  360
IEPLTTFPMY PSAFPLRLKR PWASGLPMHG MFSGGGTDDF ARYSSLMWLR DGNRGTQSLN  420
FQGHGVSPWL QPRMDSPLLG FKPDTYQQMA AAALQEIRSG DPLKQPSAAL QYQQTQNLNG  480
GLNSLFANHV LQQMQYQSQQ SPLQAVQPGH FQNTVDSGFL QGQFPHLQLH NPQQLLKEQD  540
LQQQQRQQVL QEQSHQEMPQ QLPSDHRIGD VASESGSAPQ AQSSLLGGPS FYHQNLLEGN  600
SDPSLHLHNN FDNFSSQETS NLLSLPQSGQ LMASDGWPSK RLAVESIHPE VQSMHLKIEK  660
VNHQTSMSHF PGTFPPQSAR GCSIVQGCEA NAENRLLSSS FELQDGMTSV RSDASRETDS  720
LAIPLLRYSG ADLTTENTLA TSNCLGESGT FNSLNNISVN PSQGATFVKV YKSGSLGRSL  780
DISRFSSYCE LRSELERLFG LEGQLEDPVR SGWQLVFVDR ENDILLVGDD PWQEFANSVW  840
CIKILSPQEV QQLVRGGDGL LSSPGARMQQ SNACEDYSVS HNMQNISGNI ASVAPLDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1622536251388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1217030.0AK121703.1 Oryza sativa Japonica Group cDNA clone:J033074F07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619766.10.0PREDICTED: auxin response factor 25 isoform X1
SwissprotQ2QM840.0ARFY_ORYSJ; Auxin response factor 25
TrEMBLA0A0D9Y1E30.0A0A0D9Y1E3_9ORYZ; Auxin response factor
STRINGORGLA12G0159700.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP127122934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6